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PM-726
Fix issues with Pegasus Tutorial VM from SW Carpentry
Reduce logging for error messages related to the <machine> tag in machine/linux.c
monitord to handle missing DAGMAN finished eventsPM-721
dax2dot does not consider non file dependencies when -f option is specified
Allow for app metrics to be passed to the metrics serverPM-719
Option for an output replica catalog that tells Pegasus where to place the output products
pegasus-transfer shell variable expansion should be revisited
pegasus-gridftp does not read X509_USER_PROXY
Change the way how edges are added from create dir jobs to the rest of the workflow
Add algorithm to Pegasus to remove duplicate edges in the workflow
PMC query applied to non PMC workflows
monitord unable to parse output of big PMC clustered jobs
pegasus-status does not work correctly with HTCondor 8.0
Java DAX API behaves strangely with stdout
pegasus-exitcode failing for clustered jobs output
pegasus-analyzer does not track pre script failures
resurrect the debug-job feature for pegasus lite jobs in pegasus-analyzer
pegasus lite should always attempt to stage out output file in case a job fails
pegasus-transfer should allow transfers from one bucket in s3 to another in s3
IndexOutOfBoundsException in the cleanup algorithm when coupled with data reuse
support bypass of first level staging for for input files
exposing a knob for fine tuning the number of cleanup jobs generated per level of the workflow
pegasus-cleanup should delete symlinks
pegasus lite does not handle jobs where user specifies a stdin file
update the semantics for the output-dir option
directory based replica catalog backend to support flat lfn's
kickstart segfaults if a user applications stdout has a lot of whitespace characters
expose direct ssh submission for bosco
monitord recovery mode for sqlite
setup of monitord logs by pegasus dagman
pegasus-transfer should falll back to lcg clients if srm-* clients are not available
external URL for executables staged are created incorrectly for SRM servers
Make SubDAX planning prescript run in the scratch directory instead of the dag directory
modify pegasus status to allow the user to control the columns displayed in the long mode.
Adding timing information to tasks
Improve Monitord performance (size and time) for large workflows
pegasus-monitord hangs with 100% CPU on PMC jobs
Pegasus does not pick up profiles specified as property on the command line
the separate cleanup workflow created by pegasus in the cleanup directory should refer to pegasus-cleanup executable
pegasus statistics should take in multiple workflow id's as input
recursive planning ahead
Errors When condor version cannot be determined
Ability to stage a whole directory
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