• Type: Icon: Sub-task Sub-task
    • Resolution: Fixed
    • Priority: Icon: Major Major
    • 3.1
    • Affects Version/s: 3.1
    • Component/s: None
    • None

      Pegasus 3.1.0cvs

      I have a workflow I'm running with style=glideinwms. The jobs are supposed to be mapped out to universe=vanilla and it works for all jobs except merge jobs. They look like:

      ######################################################################

      1. PEGASUS WMS GENERATED SUBMIT FILE
      2. DAG : montage, Index = 0, Count = 1
      3. SUBMIT FILE NAME : merge_mProject-3.0_PID1_ID16.sub
        ######################################################################
        stream_error = false
        stream_output = false
        environment = GLOBUS_LOCATION=/opt/osg/globus;PATH=/opt/pfgridapp/engage/rynge/montage/3.2_beta6_mats/bin:/usr/bin:/bin;PEGASUS_HOME=/opt/pfgridapp/engage/rynge/pegasus/3.0.2;
        arguments = " -f "
        copy_to_spool = false
        error = /runs2/galactic-plane/prairiefire/j-00123/galactic-plane-20110419-142316/galactic-plane-20110419-142316/./tile_01400_11000/merge_mProject-3.0_PID1_ID16.err
        executable = /opt/pfgridapp/engage/rynge/pegasus/3.0.2/bin/seqexec
        globusrsl = (jobtype=single)
        grid_resource = gt2 pf-grid.unl.edu/jobmanager-condor
        input = /runs2/galactic-plane/prairiefire/j-00123/galactic-plane-20110419-142316/galactic-plane-20110419-142316/./tile_01400_11000/merge_mProject-3.0_PID1_ID16.in
        log = /runs2/galactic-plane/prairiefire/j-00123/galactic-plane-20110419-142316/galactic-plane-20110419-142316/./tile_0140011000/tile01400_11000.log
        notification = NEVER
        output = /runs2/galactic-plane/prairiefire/j-00123/galactic-plane-20110419-142316/galactic-plane-20110419-142316/./tile_01400_11000/merge_mProject-3.0_PID1_ID16.out
        periodic_release = (NumSystemHolds <= 2)
        periodic_remove = (NumSystemHolds > 2)
        priority = 20
        remote_initialdir = /opt/pfgriddata/engage/tmp/galactic-plane-20110419-142316/tile_01400_11000
        submit_event_user_notes = pool:Prairiefire
        transfer_error = true
        transfer_executable = false
        transfer_input = true
        transfer_output = true
        universe = grid
        +pegasus_generator = "Pegasus"
        +pegasus_version = "3.1.0cvs"
        +pegasus_wf_name = "montage-0"
        +pegasus_wf_time = "20110419T153555-0700"
        +pegasus_wf_xformation = "pegasus::seqexec"
        +pegasus_job_class = 1
        +pegasus_job_id = "merge_mProject-3.0_PID1_ID16"
        +pegasus_site = "Prairiefire"
        +pegasus_job_runtime = 0
        queue
        ######################################################################
      4. END OF SUBMIT FILE
        ######################################################################

      My site catalog has:

      <site handle="Prairiefire" arch="x86" os="LINUX">
      <grid type="gt2" contact="pf-grid.unl.edu/jobmanager-fork" scheduler="Fork" jobtype="auxillary"/>
      <grid type="gt2" contact="pf-grid.unl.edu/jobmanager-condor" scheduler="unknown" jobtype="compute"/>
      <head-fs>
      <scratch>
      <shared>
      <file-server protocol="gsiftp" url="gsiftp://pf-grid.unl.edu:2811" mount-point="/opt/pfgriddata/engage/tmp"/>
      <internal-mount-point mount-point="/opt/pfgriddata/engage/tmp"/>
      </shared>
      </scratch>
      <storage>
      <shared>
      <file-server protocol="gsiftp" url="gsiftp://pf-grid.unl.edu:2811" mount-point="/opt/pfgriddata/engage/tmp"/>
      <internal-mount-point mount-point="/opt/pfgriddata/engage/tmp"/>
      </shared>
      </storage>
      </head-fs>
      <replica-catalog type="LRC" url="rlsn://dummyValue.url.edu" />
      <profile namespace="pegasus" key="style">glideinwms</profile>
      <profile namespace="env" key="PEGASUS_HOME" >/opt/pfgridapp/engage/rynge/pegasus/3.0.2</profile>
      <profile namespace="env" key="GLOBUS_LOCATION" >/opt/osg/globus</profile>
      <profile namespace="env" key="PATH" >/opt/pfgridapp/engage/rynge/montage/3.2_beta6_mats/bin:/usr/bin:/bin</profile>
      </site>

            Assignee:
            rynge-page Mats Rynge [X] (Inactive)
            Reporter:
            rynge-page Mats Rynge [X] (Inactive)
            Watchers:
            0 Start watching this issue

              Created:
              Updated:
              Resolved: