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Type: Sub-task
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Resolution: Fixed
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Priority: Major
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Affects Version/s: 3.1
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Component/s: None
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None
Pegasus 3.1.0cvs
I have a workflow I'm running with style=glideinwms. The jobs are supposed to be mapped out to universe=vanilla and it works for all jobs except merge jobs. They look like:
######################################################################
- PEGASUS WMS GENERATED SUBMIT FILE
- DAG : montage, Index = 0, Count = 1
- SUBMIT FILE NAME : merge_mProject-3.0_PID1_ID16.sub
######################################################################
stream_error = false
stream_output = false
environment = GLOBUS_LOCATION=/opt/osg/globus;PATH=/opt/pfgridapp/engage/rynge/montage/3.2_beta6_mats/bin:/usr/bin:/bin;PEGASUS_HOME=/opt/pfgridapp/engage/rynge/pegasus/3.0.2;
arguments = " -f "
copy_to_spool = false
error = /runs2/galactic-plane/prairiefire/j-00123/galactic-plane-20110419-142316/galactic-plane-20110419-142316/./tile_01400_11000/merge_mProject-3.0_PID1_ID16.err
executable = /opt/pfgridapp/engage/rynge/pegasus/3.0.2/bin/seqexec
globusrsl = (jobtype=single)
grid_resource = gt2 pf-grid.unl.edu/jobmanager-condor
input = /runs2/galactic-plane/prairiefire/j-00123/galactic-plane-20110419-142316/galactic-plane-20110419-142316/./tile_01400_11000/merge_mProject-3.0_PID1_ID16.in
log = /runs2/galactic-plane/prairiefire/j-00123/galactic-plane-20110419-142316/galactic-plane-20110419-142316/./tile_0140011000/tile01400_11000.log
notification = NEVER
output = /runs2/galactic-plane/prairiefire/j-00123/galactic-plane-20110419-142316/galactic-plane-20110419-142316/./tile_01400_11000/merge_mProject-3.0_PID1_ID16.out
periodic_release = (NumSystemHolds <= 2)
periodic_remove = (NumSystemHolds > 2)
priority = 20
remote_initialdir = /opt/pfgriddata/engage/tmp/galactic-plane-20110419-142316/tile_01400_11000
submit_event_user_notes = pool:Prairiefire
transfer_error = true
transfer_executable = false
transfer_input = true
transfer_output = true
universe = grid
+pegasus_generator = "Pegasus"
+pegasus_version = "3.1.0cvs"
+pegasus_wf_name = "montage-0"
+pegasus_wf_time = "20110419T153555-0700"
+pegasus_wf_xformation = "pegasus::seqexec"
+pegasus_job_class = 1
+pegasus_job_id = "merge_mProject-3.0_PID1_ID16"
+pegasus_site = "Prairiefire"
+pegasus_job_runtime = 0
queue
###################################################################### - END OF SUBMIT FILE
######################################################################
My site catalog has:
<site handle="Prairiefire" arch="x86" os="LINUX">
<grid type="gt2" contact="pf-grid.unl.edu/jobmanager-fork" scheduler="Fork" jobtype="auxillary"/>
<grid type="gt2" contact="pf-grid.unl.edu/jobmanager-condor" scheduler="unknown" jobtype="compute"/>
<head-fs>
<scratch>
<shared>
<file-server protocol="gsiftp" url="gsiftp://pf-grid.unl.edu:2811" mount-point="/opt/pfgriddata/engage/tmp"/>
<internal-mount-point mount-point="/opt/pfgriddata/engage/tmp"/>
</shared>
</scratch>
<storage>
<shared>
<file-server protocol="gsiftp" url="gsiftp://pf-grid.unl.edu:2811" mount-point="/opt/pfgriddata/engage/tmp"/>
<internal-mount-point mount-point="/opt/pfgriddata/engage/tmp"/>
</shared>
</storage>
</head-fs>
<replica-catalog type="LRC" url="rlsn://dummyValue.url.edu" />
<profile namespace="pegasus" key="style">glideinwms</profile>
<profile namespace="env" key="PEGASUS_HOME" >/opt/pfgridapp/engage/rynge/pegasus/3.0.2</profile>
<profile namespace="env" key="GLOBUS_LOCATION" >/opt/osg/globus</profile>
<profile namespace="env" key="PATH" >/opt/pfgridapp/engage/rynge/montage/3.2_beta6_mats/bin:/usr/bin:/bin</profile>
</site>