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  1. Pegasus
  2. PM-874

separate inputs and outputs while printing out the job description

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Details

    • Improvement
    • Status: Closed
    • Major
    • Resolution: Fixed
    • master
    • master, 4.5.0
    • Workflow API Libraries
    • None
    • Python DAX API

    Description

      I am using the python DAX api, and I notice that the generated job descriptions don't bin the inputs and outputs together

      for e.g

      <job id="ID0000003" name="phase-shapeit">
      <argument>22 chr22</argument>
      <uses name="testing-22.vcf.bgz" link="input"/>
      <uses name="testing-22.haps" link="output" transfer="false"/>
      <uses name="genetic_map_chr22_combined_b37.txt" link="input"/>
      <uses name="1000GP_Phase3_.sample" link="input"/>
      <uses name="testing-22-duplicate-snp-site.txt" link="input"/>
      <uses name="snps-to-exclude.txt" link="input"/>
      <uses name="1000GP_Phase3_22.hap.gz" link="input"/>
      <uses name="testing-22.sample" link="output" transfer="false"/>
      <uses name="1000GP_Phase3_22legend.gz" link="input"/>
      </job>

      It would be nice if while printing , the API prints the inputs first and then the outputs

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            gideon Gideon Juve (Inactive)
            vahi Karan Vahi
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            Dates

              Created:
              Updated:
              Resolved: