pegasus-analyzer does not show the stderr for pegasus lite jobs

for one of our workflows in the testing framework we noticed that pegasus-analyzer did not print out the message from .err file for the jobs.

e.g.
# STATUS is Running - 5 Condor jobs total (R:5), 4 Condor-G jobs (A:4)
24-Dec-2013 11:04:25 # STATUS is Failure
24-Dec-2013 11:04:25 *** Workflow failed ***
24-Dec-2013 11:04:27
24-Dec-2013 11:04:27 ************************************Summary*************************************
24-Dec-2013 11:04:27
24-Dec-2013 11:04:27 Submit Directory : /lfs1/software/bamboo/data/xml-data/build-dir/PEGASUS-WT-T11/test/core/011-rosetta-staging-site/work/bamboo/pegasus/rosetta/20131224T105607-0800
24-Dec-2013 11:04:27 Total jobs : 24 (100.00%)
24-Dec-2013 11:04:27 # jobs succeeded : 6 (25.00%)
24-Dec-2013 11:04:27 # jobs failed : 10 (41.67%)
24-Dec-2013 11:04:27 # jobs unsubmitted : 8 (33.33%)
24-Dec-2013 11:04:27
24-Dec-2013 11:04:27 ******************************Failed jobs' details******************************
24-Dec-2013 11:04:27
24-Dec-2013 11:04:27 =============================rosetta.exe_a12as_0070=============================
24-Dec-2013 11:04:27
24-Dec-2013 11:04:27 last state: POST_SCRIPT_FAILED
24-Dec-2013 11:04:27 site: CCG
24-Dec-2013 11:04:27 submit file: rosetta.exe_a12as_0070.sub
24-Dec-2013 11:04:27 output file: rosetta.exe_a12as_0070.out.003
24-Dec-2013 11:04:27 error file: rosetta.exe_a12as_0070.err.003
24-Dec-2013 11:04:27
24-Dec-2013 11:04:27
24-Dec-2013 11:04:27 =============================rosetta.exe_a12as_0122=============================
24-Dec-2013 11:04:27