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  1. Pegasus
  2. PM-570

Updating stampede.db fails on RHEL5/32bit system

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      I am trying to follow the instructions on http://pegasus.isi.edu/wms/docs/4.0/useful_tips.php#id644312

      However, regardless of which python I am using it. I get a blurb of errors (of course, synthale.isi.edu is a CentOS 5.4 32 bit system that hasn't been upgraded in years, and nobody wants to do that):

      python26 /opt/pegasus/default/share/pegasus/sql/schema_tool.py -c connString=sqlite:/home/voeckler/page/upload/submit/voeckler/pegasus/page-clean/run0004/page-clean-0.stampede.db
      Traceback (most recent call last):
        File "/opt/pegasus/default/share/pegasus/sql/schema_tool.py", line 75, in <module>
          main()
        File "/opt/pegasus/default/share/pegasus/sql/schema_tool.py", line 63, in main
          conn = ConnHandle(**init)
        File "/opt/pegasus/pegasus-4.0.0/lib/pegasus/python/netlogger/analysis/schema/schema_check.py", line 36, in __init__
          SQLAlchemyInit.__init__(self, connString, initializeToPegasusDB, **_kw)
        File "/opt/pegasus/pegasus-4.0.0/lib/pegasus/python/netlogger/analysis/modules/_base.py", line 126, in __init__
          self.db = create_engine(connString, echo=self._dbg, pool_recycle=True)
        File "/opt/pegasus/pegasus-4.0.0/lib/pegasus/externals/python/sqlalchemy/engine/__init__.py", line 244, in create_engine
          return strategy.create(*args, **kwargs)
        File "/opt/pegasus/pegasus-4.0.0/lib/pegasus/externals/python/sqlalchemy/engine/strategies.py", line 44, in create
          u = url.make_url(name_or_url)
        File "/opt/pegasus/pegasus-4.0.0/lib/pegasus/externals/python/sqlalchemy/engine/url.py", line 164, in make_url
          return _parse_rfc1738_args(name_or_url)
        File "/opt/pegasus/pegasus-4.0.0/lib/pegasus/externals/python/sqlalchemy/engine/url.py", line 205, in _parse_rfc1738_args
          "Could not parse rfc1738 URL from string '%s'" % name)
      sqlalchemy.exc.ArgumentError: Could not parse rfc1738 URL from string 'sqlite:/home/voeckler/page/upload/submit/voeckler/pegasus/page-clean/run0004/page-clean-0.stampede.db'


      I'll downgrade to Pegasus 3.1 for now...

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            • Assignee:
              gmehta Gaurang Mehta (Inactive)
              Reporter:
              voeckler Jens Voeckler
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                Updated:
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