Uploaded image for project: 'Pegasus'
  1. Pegasus
  2. PM-540

Perl API Bug in Compound Transformations

    XMLWordPrintable

    Details

      Description

      my $SIPHTseq_PTU_parse = newTransformation (NS, 'SIPHTseq_PTU_parse', '1.0');

      $SIPHTseq_PTU_parse -> uses (newFilename (name => 'PTU_homol_add.sh', %exec));
      $SIPHTseq_PTU_parse -> uses (newFilename (name => 'PTU_para_add.sh', %exec));
      $SIPHTseq_PTU_parse -> uses (newFilename (name => 'PTU_TFBS_add.sh', %exec));

      $adag -> addTransformation ($SIPHTseq_PTU_parse);

      Generates output as

      <executable namespace="sipht" name="SIPHTseq_PTU_parse" version="1.0">
          <uses name="PTU_para_add.sh" />
          <uses name="PTU_homol_add.sh" />
          <uses name="PTU_TFBS_add.sh" />
        </executable>

      executable should be replaced with transformation.

        Attachments

          Activity

            People

            • Assignee:
              mayani Rajiv Mayani
              Reporter:
              mayani Rajiv Mayani
            • Watchers:
              0 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: