here is an example snippet

sls input file for clustered job is correct
BUBBLES:run0016 vahi$ more sls_merge_vahi-findrange_PID2_ID1.in
srm://wind.isi.edu/submit/blackdiamond/data/david.f.a
file:///osg/worker-node/tmp/vahi-pegasus-blackdiamond-run0016-merge_vahi-findrange_PID2_ID1/david.f.a
gsiftp://wind.isi.edu/nfs/shared-scratch/vahi/workdir/vahi/pegasus/blackdiamond/run0016/vahi.f.b1
file:///osg/worker-node/tmp/vahi-pegasus-blackdiamond-run0016-merge_vahi-findrange_PID2_ID1/vahi.f.b1
gsiftp://wind.isi.edu/nfs/shared-scratch/vahi/workdir/vahi/pegasus/blackdiamond/run0016/vahi.f.b2
file:///osg/worker-node/tmp/vahi-pegasus-blackdiamond-run0016-merge_vahi-findrange_PID2_ID1/vahi.f.b2
gsiftp://wind.isi.edu/nfs/shared-scratch/vahi/workdir/vahi/pegasus/blackdiamond/run0016/vahi-findrange
file:///osg/worker-node/tmp/vahi-pegasus-blackdiamond-run0016-merge_vahi-findrange_PID2_ID1/vahi-findrange

SLS output file for clustered job is wrong
BUBBLES:run0016 vahi$ more sls_merge_vahi-findrange_PID2_ID1.out
file:///osg/worker-node/tmp/vahi-pegasus-blackdiamond-run0016-merge_vahi-findrange_PID2_ID1/vahi.f.c1
gsiftp://wind.isi.edu//tmp/vahi.f.c1
file:///osg/worker-node/tmp/vahi-pegasus-blackdiamond-run0016-merge_vahi-findrange_PID2_ID1/vahi.f.c2
gsiftp://wind.isi.edu//tmp/vahi.f.c2

SLS output file for non clustered job is correct

BUBBLES:run0016 vahi$ more sls_preprocess_ID000001.out
file:///osg/worker-node/tmp/vahi-pegasus-blackdiamond-run0016-preprocess_ID000001/vahi.f.b1
gsiftp://wind.isi.edu//nfs/shared-scratch/vahi/workdir/vahi/pegasus/blackdiamond/run0016/vahi.f.b1
file:///osg/worker-node/tmp/vahi-pegasus-blackdiamond-run0016-preprocess_ID000001/vahi.f.b2
gsiftp://wind.isi.edu//nfs/shared-scratch/vahi/workdir/vahi/pegasus/blackdiamond/run0016/vahi.f.b2