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  1. Pegasus
  2. PM-1335 YAML based transformation catalog
  3. PM-1540

allow mount point regex to parse shell variable names

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    Details

    • Type: Sub-task
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: master
    • Fix Version/s: master, 5.0.0
    • Component/s: None
    • Labels:
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      Description

      for pegasus-tc-converter to convert to yam tc container mount points might have variable names listed. for the conversion purposes we don't expand variable names and currently regex fails
           # mount point in the container
           mount "/lizard/scratch-90-days/${TEST_NAME}:/existing/data"

      Unable to find a $JAVA_HOME at "/usr", continuing with system-provided Java...
      2020.05.01 12:19:46.557 PDT: [FATAL ERROR]
       [1]: Unable to instantiate Transformation Catalog at edu.isi.pegasus.planner.catalog.transformation.TransformationFactory.loadInstance(TransformationFactory.java:164)
       [2]: edu.isi.pegasus.planner.catalog.transformation.impl.Text caught edu.isi.pegasus.planner.parser.ScannerException line 94: at edu.isi.pegasus.planner.parser.TransformationCatalogTextParser.parse(TransformationCatalogTextParser.java:219)
       [3]: Unable to parse mount /lizard/scratch-90-days/${TEST_NAME}:/existing/data at edu.isi.pegasus.planner.catalog.transformation.classes.Container$MountPoint.parse(Container.java:593)

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            • Assignee:
              vahi Karan Vahi
              Reporter:
              vahi Karan Vahi
            • Watchers:
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              Dates

              • Created:
                Updated:
                Resolved: